Kalustayan's in Oak. or Bay Area?
No equivalent, but we do have a handful of places that when taken together might get close.
In Berkeley, I think some of the Indian grocery stores should have a good selection of whole and ground spices.
Also in Berkeley, Berkeley Bowl has bulk nuts and a great selection of oddball condiments.
In San Francisco, Rainbow Grocery has a great section of bulk spices and nuts.
Haig's Delicatessan in San Francisco has some middle eastern spices, but I can never tell how old something is at Haig's.